Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0804288.1c.5a with 146 members (myosin regulatory light)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

Completeness score: 0.82

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

92.6%

This HOG has 2331 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0803363	Eukaryota	1729		28.2%	2
HOG:E1033298	LUCA	1155		82.3%	2
HOG:E0801869	Eukaryota	1075		75.6%	2
HOG:E0805765	Eukaryota	1012		89.8%	2
HOG:E0789205	Metazoa	724		53.5%	2
HOG:E0814633	Eukaryota	686		31.6%	2
HOG:E0793156	Opisthokonta	535		52.9%	2
HOG:E0793124	Opisthokonta	527		75.5%	2
HOG:E0754390	Vertebrata	480		51.0%	2
HOG:E0781493	Eumetazoa	476		52.7%	2
HOG:E0778029	Eumetazoa	461		89.8%	2
HOG:E0779281	Eumetazoa	425		97.6%	2
HOG:E0277118	Mesangiospermae	418		92.6%	2
HOG:E0793643	Opisthokonta	390		20.0%	2
HOG:E0780622	Eumetazoa	326		34.7%	2
HOG:E0761898	Bilateria	305		58.0%	2
HOG:E0793142	Opisthokonta	305		39.0%	2
HOG:E0276771	Mesangiospermae	267		85.0%	2
HOG:E0761128	Bilateria	254		4.7%	2
HOG:E0781601	Eumetazoa	254		69.3%	2
HOG:E0316793	Embryophyta	235		62.1%	2
HOG:E0758237	Chordata	225		98.7%	2
HOG:E0753938	Vertebrata	218		99.1%	2
HOG:E0314885	Embryophyta	207		71.5%	2
HOG:E0752404	Vertebrata	206		84.0%	2

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